HTSlib input validation vulnerability

HTSlib is a C-language library developed by samtools. Versions of HTSlib prior to 1.23.1, 1.22.2, and 1.21.1 contained a vulnerability related to input validation errors. This vulnerability stemmed from the late validation of reference ID fields in the cramdecodeSlice function, which could lead t...

HTSlib input validation vulnerability

HTSlib is a C-language library file developed by samtools. Versions of HTSlib prior to 1.23.1, 1.22.2, and 1.21.1 contained a vulnerability related to input validation errors. This vulnerability stemmed from the lack of verification of the paired reference ID field in the cramdecodeSlice function...

GHSA-96VH-4RFP-C42C HTSJDK is vulnerable to exposure of resource(s) to the wrong sphere

The package com.github.samtools:htsjdk before 3.0.1 are vulnerable to Creation of Temporary File in Directory with Insecure Permissions due to the createTempDir function in util/IOUtil.java not checking for the existence of the temporary directory before attempting to create it...