[SECURITY] Fedora 42 Update: htslib-1.23.1-1.fc42

HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM, CRAM and VCF, used for high-throughput sequencing data, and is the core library used by samtools and bcftools...

[SECURITY] Fedora 43 Update: htslib-1.23.1-1.fc43

HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM, CRAM and VCF, used for high-throughput sequencing data, and is the core library used by samtools and bcftools...

CVE-2026-31971 HTSlib CRAM decoder vulnerable to buffer overflow

HTSlib is a library for reading and writing bioinformatics file formats. CRAM is a compressed format which stores DNA sequence alignment data using a variety of encodings and compression methods. When reading data encoded using the BYTEARRAYLEN method, the crambytearraylendecode failed to validat...

HTSlib 安全漏洞

HTSlib is a C-language library file developed by samtools. Versions of HTSlib prior to 1.23.1, 1.22.2, and 1.21.1 have security vulnerabilities. These vulnerabilities stem from the bgzfindexloadhfile function, which involves integer overflows, potentially leading to heap buffer overflows...

samtools htsjdk license issue vulnerability

htsjdk is a samtools open source a Java API for high-throughput sequencing data HTS format . An authorization issue exists in htsjdk 3.0.1 and earlier versions com.github.samtools.The vulnerability is due to the createTempDir function in util/IOUtil, which creates a temporary file in a directory...

htsjdk 安全漏洞

htsjdk is a samtools open source a Java API for high-throughput sequencing data HTS format . An authorization issue exists in htsjdk 3.0.1 and earlier versions com.github.samtools.The vulnerability is due to the createTempDir function in util/IOUtil, which creates a temporary file in a directory...

HTSlib Arbitrary File Overwrite Vulnerability

HTSlib is a library written in C for accessing high-throughput sequencing data such as SAM, CRAM and VCF. A competitive condition vulnerability exists in the cram/cramio.c file in HTSlib version 1.8. An attacker can exploit this vulnerability by performing a symbolic link attack to overwrite...