CVE-2026-31968

A flaw was found in HTSlib, a library for reading and writing bioinformatics file formats. Specifically, within the CRAM Compressed Reference-oriented Alignment Map format, incomplete validation of context in the VARINT and CONST encodings could lead to a heap or stack buffer overflow. A remote...

CVE-2026-31967

A flaw was found in HTSlib, a library used for bioinformatics file formats. When processing CRAM Compressed Reference-oriented Alignment Map records, the cramdecodeslice function fails to validate the mate reference ID field. This oversight allows an attacker to craft a malicious CRAM file, which...

CVE-2026-31969

A flaw was found in HTSlib, a library used for bioinformatics file formats. A remote attacker could exploit an out-by-one error when processing a specially crafted CRAM Compressed Reference-oriented Alignment Map file. This vulnerability can lead to a heap buffer overflow, potentially allowing fo...

CVE-2026-31971

A flaw was found in HTSlib, a library used for bioinformatics file formats. When reading CRAM Compressed Reference-oriented Alignment Map files, the crambytearraylendecode function did not properly validate the size of incoming data against the allocated buffer. This memory corruption vulnerabili...

DEBIAN-CVE-2026-31973

SAMtools is a program for reading, manipulating and writing bioinformatics file formats. Starting in version 1.17, in the cram-size command, used to write information about how well CRAM files are compressed, a check to see if the cramdecodecompressionheader was missing. If the function returned ...

CVE-2026-31973

SAMtools is a program for reading, manipulating and writing bioinformatics file formats. Starting in version 1.17, in the cram-size command, used to write information about how well CRAM files are compressed, a check to see if the cramdecodecompressionheader was missing. If the function returned ...

UBUNTU-CVE-2026-31973

SAMtools is a program for reading, manipulating and writing bioinformatics file formats. Starting in version 1.17, in the cram-size command, used to write information about how well CRAM files are compressed, a check to see if the cramdecodecompressionheader was missing. If the function returned ...

CVE-2026-31973

SAMtools is a program for reading, manipulating and writing bioinformatics file formats. Starting in version 1.17, in the cram-size command, used to write information about how well CRAM files are compressed, a check to see if the cramdecodecompressionheader was missing. If the function returned ...

CVE-2026-31964

A flaw was found in HTSlib, a library for reading and writing bioinformatics file formats. When processing specially crafted CRAM Compressed Reference-aligned Alignment Map data, specifically records that omit sequence or quality data using the CONST, XPACK, or XRLE encodings, the library attempt...

CVE-2026-31973 NULL pointer dereference in samtools cram-size

SAMtools is a program for reading, manipulating and writing bioinformatics file formats. Starting in version 1.17, in the cram-size command, used to write information about how well CRAM files are compressed, a check to see if the cramdecodecompressionheader was missing. If the function returned ...

CVE-2026-31973 NULL pointer dereference in samtools cram-size

SAMtools is a program for reading, manipulating and writing bioinformatics file formats. Starting in version 1.17, in the cram-size command, used to write information about how well CRAM files are compressed, a check to see if the cramdecodecompressionheader was missing. If the function returned ...

CVE-2026-31973

SAMtools is a program for reading, manipulating and writing bioinformatics file formats. Starting in version 1.17, in the cram-size command, used to write information about how well CRAM files are compressed, a check to see if the cramdecodecompressionheader was missing. If the function returned ...

CVE-2026-31973 NULL pointer dereference in samtools cram-size

SAMtools is a program for reading, manipulating and writing bioinformatics file formats. Starting in version 1.17, in the cram-size command, used to write information about how well CRAM files are compressed, a check to see if the cramdecodecompressionheader was missing. If the function returned ...

CVE-2026-31973

SAMtools is a program for reading, manipulating and writing bioinformatics file formats. Starting in version 1.17, in the cram-size command, used to write information about how well CRAM files are compressed, a check to see if the cramdecodecompressionheader was missing. If the function returned ...

EUVD-2026-12958

SAMtools is a program for reading, manipulating and writing bioinformatics file formats. Starting in version 1.17, in the cram-size command, used to write information about how well CRAM files are compressed, a check to see if the cramdecodecompressionheader was missing. If the function returned ...

CVE-2026-31973

SAMtools includes a NULL pointer dereference in the cram-size path of CRAM header handling: if cram_decode_compression_header() returns an error, a NULL pointer dereference may occur, crashing the program. This affects 1.17+ before fixes. The available connected advisories confirm fixes in versio...

CVE-2026-31963

A flaw was found in HTSlib, a library for reading and writing bioinformatics file formats. When processing CRAM Compressed Reference-oriented Alignment Map files, an out-by-one error in feature decoding can cause a heap buffer overflow. This vulnerability allows an attacker to craft a malicious...

CVE-2026-31962

A flaw was found in htslib, a library for reading and writing bioinformatics file formats. A local user could exploit a heap buffer overflow vulnerability by opening a specially crafted CRAM file. This flaw occurs due to incorrect handling of certain CRAM format records, leading to reading and...

DEBIAN-CVE-2026-31971

HTSlib is a library for reading and writing bioinformatics file formats. CRAM is a compressed format which stores DNA sequence alignment data using a variety of encodings and compression methods. When reading data encoded using the BYTEARRAYLEN method, the crambytearraylendecode failed to validat...

CVE-2026-31971

HTSlib is a library for reading and writing bioinformatics file formats. CRAM is a compressed format which stores DNA sequence alignment data using a variety of encodings and compression methods. When reading data encoded using the BYTEARRAYLEN method, the crambytearraylendecode failed to validat...