66 matches found
CVE-2026-31972
SAMtools is a program for reading, manipulating and writing bioinformatics file formats. The mpileup command outputs DNA sequences that have been aligned against a known reference. On each output line it writes the reference position, optionally the reference DNA base at that position obtained fr...
CVE-2026-31972 samtools mpileup has use-after-free leading to an invalid read
SAMtools is a program for reading, manipulating and writing bioinformatics file formats. The mpileup command outputs DNA sequences that have been aligned against a known reference. On each output line it writes the reference position, optionally the reference DNA base at that position obtained fr...
CVE-2026-31972
SAMtools is a program for reading, manipulating and writing bioinformatics file formats. The "mpileup" command outputs DNA sequences that have been aligned against a known reference. On each output line it writes the reference position, optionally the reference DNA base at that position obtained...
EUVD-2026-12956
SAMtools is a program for reading, manipulating and writing bioinformatics file formats. The mpileup command outputs DNA sequences that have been aligned against a known reference. On each output line it writes the reference position, optionally the reference DNA base at that position obtained fr...
CVE-2026-31972
SAMtools is a program for reading, manipulating and writing bioinformatics file formats. The mpileup command outputs DNA sequences that have been aligned against a known reference. On each output line it writes the reference position, optionally the reference DNA base at that position obtained fr...
CVE-2026-31972 samtools mpileup has use-after-free leading to an invalid read
SAMtools is a program for reading, manipulating and writing bioinformatics file formats. The mpileup command outputs DNA sequences that have been aligned against a known reference. On each output line it writes the reference position, optionally the reference DNA base at that position obtained fr...
Samtools code issues and vulnerabilities
Samtools is a set of open-source tools for processing high-throughput sequencing data. Versions of Samtools prior to 1.23.1, 1.22.2, and 1.21.1 have code vulnerabilities. These vulnerabilities stem from a lack of error checking in the cram-size command, which may lead to null pointer dereferencin...
HTSlib input validation vulnerability
HTSlib is a C-language library file developed by samtools. Versions of HTSlib prior to 1.23.1, 1.22.2, and 1.21.1 contained a vulnerability related to input validation errors. This vulnerability stemmed from the lack of verification of the paired reference ID field in the cramdecodeSlice function...
CVE-2026-31973: NULL Pointer Dereference
SAMtools is a program for reading, manipulating and writing bioinformatics file formats. Starting in version 1.17, in the cram-size command, used to write information about how well CRAM files are compressed, a check to see if the cramdecodecompressionheader was missing. If the function returned ...
CVE-2026-31972: Use After Free
SAMtools is a program for reading, manipulating and writing bioinformatics file formats. The mpileup command outputs DNA sequences that have been aligned against a known reference. On each output line it writes the reference position, optionally the reference DNA base at that position obtained fr...
HTSlib input validation vulnerability
HTSlib is a C-language library developed by samtools. Versions of HTSlib prior to 1.23.1, 1.22.2, and 1.21.1 contained a vulnerability related to input validation errors. This vulnerability stemmed from the late validation of reference ID fields in the cramdecodeSlice function, which could lead t...
samtools resource management error vulnerability
Samtools is an open-source toolkit for processing high-throughput sequencing data. Versions of Samtools prior to 1.21.1 and 1.22 contain a resource management vulnerability. This vulnerability stems from the mpileup command prematurely discarding data, which may lead to the reading of memory that...
EUVD-2017-1483
Malware in sbrugna...
CVE-2017-1000206
samtools htslib library version 1.4.0 and earlier is vulnerable to buffer overflow in the CRAM rANS codec resulting in potential arbitrary code execution...
samtools htsjdk license issue vulnerability
htsjdk is a samtools open source a Java API for high-throughput sequencing data HTS format . An authorization issue exists in htsjdk 3.0.1 and earlier versions com.github.samtools.The vulnerability is due to the createTempDir function in util/IOUtil, which creates a temporary file in a directory...
GHSA-96VH-4RFP-C42C HTSJDK is vulnerable to exposure of resource(s) to the wrong sphere
The package com.github.samtools:htsjdk before 3.0.1 are vulnerable to Creation of Temporary File in Directory with Insecure Permissions due to the createTempDir function in util/IOUtil.java not checking for the existence of the temporary directory before attempting to create it...
DEBIAN-CVE-2017-1000206
samtools htslib library version 1.4.0 and earlier is vulnerable to buffer overflow in the CRAM rANS codec resulting in potential arbitrary code execution...
CVE-2017-1000206
samtools htslib library version 1.4.0 and earlier is vulnerable to buffer overflow in the CRAM rANS codec resulting in potential arbitrary code execution...
