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Linux Distros Unpatched Vulnerability : CVE-2026-31963

🗓️ 18 Mar 2026 00:00:00Reported by TenableType 
nessus
 nessus
🔗 www.tenable.com👁 2 Views

Linux host vulnerable to HTSlib CVE-2026-31963 causing heap overflow; may enable code execution; fixes in 1.23.1, 1.22.2, 1.21.1.

Related
Refs
Code
ReporterTitlePublishedViews
Family
ATTACKERKB
CVE-2026-31963
18 Mar 202618:22
attackerkb
Circl
CVE-2026-31963
19 Mar 202622:00
circl
CNNVD
HTSlib 缓冲区错误漏洞
18 Mar 202600:00
cnnvd
CVE
CVE-2026-31963
18 Mar 202618:22
cve
Cvelist
CVE-2026-31963 HTSlib CRAM reader has heap buffer overflow due to improper validation of input
18 Mar 202618:22
cvelist
Debian CVE
CVE-2026-31963
18 Mar 202618:22
debiancve
EUVD
EUVD-2026-12930
18 Mar 202618:22
euvd
Fedora
[SECURITY] Fedora 43 Update: samtools-1.23.1-1.fc43
28 Mar 202600:46
fedora
Fedora
[SECURITY] Fedora 42 Update: bcftools-1.23.1-1.fc42
28 Mar 202601:07
fedora
Fedora
[SECURITY] Fedora 43 Update: bcftools-1.23.1-1.fc43
28 Mar 202600:46
fedora
Rows per page
#%NASL_MIN_LEVEL 80900
##
# (C) Tenable, Inc.
##

include('compat.inc');

if (description)
{
  script_id(302970);
  script_version("1.6");
  script_set_attribute(attribute:"plugin_modification_date", value:"2026/05/22");

  script_cve_id("CVE-2026-31963");

  script_name(english:"Linux Distros Unpatched Vulnerability : CVE-2026-31963");

  script_set_attribute(attribute:"synopsis", value:
"The Linux/Unix host has one or more packages installed with a vulnerability that the vendor indicates will not be
patched.");
  script_set_attribute(attribute:"description", value:
"The Linux/Unix host has one or more packages installed that are impacted by a vulnerability without a vendor supplied
patch available.

  - HTSlib is a library for reading and writing bioinformatics file formats. CRAM is a compressed format which
    stores DNA sequence alignment data. As one method of removing redundant data, CRAM uses reference-based
    compression so that instead of storing the full sequence for each alignment record it stores a location in
    an external reference sequence along with a list of differences to the reference at that location as a
    sequence of features. When decoding these features, an out-by-one error in a test for CRAM features that
    appear beyond the extent of the CRAM record sequence could result in an invalid write of one attacker-
    controlled byte beyond the end of a heap buffer. Exploiting this bug causes a heap buffer overflow. If a
    user opens a file crafted to exploit this issue, it could lead to the program crashing, or overwriting of
    data and heap structures in ways not expected by the program. It may be possible to use this to obtain
    arbitrary code execution. Versions 1.23.1, 1.22.2 and 1.21.1 include fixes for this issue. There is no
    workaround for this issue. (CVE-2026-31963)

Note that Nessus relies on the presence of the package as reported by the vendor.");
  script_set_attribute(attribute:"see_also", value:"https://security-tracker.debian.org/tracker/CVE-2026-31963");
  script_set_attribute(attribute:"see_also", value:"https://ubuntu.com/security/CVE-2026-31963");
  script_set_attribute(attribute:"solution", value:
"There is no known solution at this time.");
  script_set_attribute(attribute:"agent", value:"unix");
  script_set_cvss_base_vector("CVSS2#AV:N/AC:M/Au:N/C:P/I:P/A:P");
  script_set_cvss_temporal_vector("CVSS2#E:U/RL:U/RC:C");
  script_set_cvss3_base_vector("CVSS:3.0/AV:N/AC:L/PR:N/UI:R/S:U/C:N/I:H/A:H");
  script_set_cvss3_temporal_vector("CVSS:3.0/E:U/RL:U/RC:C");
  script_set_attribute(attribute:"cvss4_vector", value:"CVSS:4.0/AV:N/AC:L/AT:N/PR:N/UI:N/VC:N/VI:H/VA:L/SC:N/SI:N/SA:N");
  script_set_attribute(attribute:"cvss4_threat_vector", value:"CVSS:4.0/E:U");
  script_set_attribute(attribute:"cvss_score_source", value:"CVE-2026-31963");

  script_set_attribute(attribute:"exploitability_ease", value:"No known exploits are available");
  script_set_attribute(attribute:"exploit_available", value:"false");
  script_set_attribute(attribute:"vendor_unpatched", value:"true");

  script_set_attribute(attribute:"vuln_publication_date", value:"2026/03/18");
  script_set_attribute(attribute:"plugin_publication_date", value:"2026/03/18");

  script_set_attribute(attribute:"plugin_type", value:"local");
  script_set_attribute(attribute:"cpe", value:"cpe:/o:canonical:ubuntu_linux:14.04:-:lts");
  script_set_attribute(attribute:"cpe", value:"cpe:/o:canonical:ubuntu_linux:16.04:-:lts");
  script_set_attribute(attribute:"cpe", value:"cpe:/o:canonical:ubuntu_linux:18.04:-:lts");
  script_set_attribute(attribute:"cpe", value:"cpe:/o:canonical:ubuntu_linux:20.04:-:lts");
  script_set_attribute(attribute:"cpe", value:"cpe:/o:canonical:ubuntu_linux:22.04:-:lts");
  script_set_attribute(attribute:"cpe", value:"cpe:/o:canonical:ubuntu_linux:24.04:-:lts");
  script_set_attribute(attribute:"cpe", value:"cpe:/o:canonical:ubuntu_linux:25.10");
  script_set_attribute(attribute:"cpe", value:"cpe:/o:debian:debian_linux:11.0");
  script_set_attribute(attribute:"cpe", value:"cpe:/o:debian:debian_linux:12.0");
  script_set_attribute(attribute:"cpe", value:"cpe:/o:debian:debian_linux:13.0");
  script_set_attribute(attribute:"cpe", value:"cpe:/o:debian:debian_linux:14.0");
  script_set_attribute(attribute:"cpe", value:"p-cpe:/a:canonical:ubuntu_linux:htslib");
  script_set_attribute(attribute:"cpe", value:"p-cpe:/a:debian:debian_linux:htslib");
  script_set_attribute(attribute:"generated_plugin", value:"current");
  script_end_attributes();

  script_category(ACT_GATHER_INFO);
  script_family(english:"Misc.");

  script_copyright(english:"This script is Copyright (C) 2026 and is owned by Tenable, Inc. or an Affiliate thereof.");

  script_dependencies("ssh_get_info2.nasl", "set_linux_os_id.nasl");
  script_require_keys("Host/cpu", "Host/local_checks_enabled", "global_settings/vendor_unpatched", "Host/OS/identifier");
  script_require_ports("Host/OS/Debian Linux-11", "Host/OS/Debian Linux-12", "Host/OS/Debian Linux-13", "Host/OS/Debian Linux-14", "Host/OS/Ubuntu Linux-14.04", "Host/OS/Ubuntu Linux-16.04", "Host/OS/Ubuntu Linux-18.04", "Host/OS/Ubuntu Linux-20.04", "Host/OS/Ubuntu Linux-22.04", "Host/OS/Ubuntu Linux-24.04", "Host/OS/Ubuntu Linux-25.10");

  exit(0);
}

if (!get_kb_item("global_settings/vendor_unpatched")) exit(0, "Unpatched Vulnerabilities Detection not active.");
if (!get_kb_item("Host/local_checks_enabled")) audit(AUDIT_LOCAL_CHECKS_NOT_ENABLED);
if (empty_or_null(get_one_kb_item("Host/Debian/dpkg-l"))) audit(AUDIT_PACKAGE_LIST_MISSING);

include('linux_unpatched.inc');

var distro_constraints_array = {
  "Debian Linux-11": {
    "package_manager": "dpkg-l",
    "constraints": [
      {
        "release": "11",
        "pkgs": [
          {"reference": "htslib-test"},
          {"reference": "libhts-dev"},
          {"reference": "libhts3"},
          {"reference": "tabix"}
        ]
      }
    ]
  },
  "Debian Linux-12": {
    "package_manager": "dpkg-l",
    "constraints": [
      {
        "release": "12",
        "pkgs": [
          {"reference": "htslib-test"},
          {"reference": "libhts-dev"},
          {"reference": "libhts3"},
          {"reference": "tabix"}
        ]
      }
    ]
  },
  "Debian Linux-13": {
    "package_manager": "dpkg-l",
    "constraints": [
      {
        "release": "13",
        "pkgs": [
          {"reference": "htslib-test"},
          {"reference": "libhts-dev"},
          {"reference": "libhts3t64"},
          {"reference": "tabix"}
        ]
      }
    ]
  },
  "Debian Linux-14": {
    "package_manager": "dpkg-l",
    "constraints": [
      {
        "release": "14",
        "pkgs": [
          {"reference": "htslib-test"},
          {"reference": "libhts-dev"},
          {"reference": "libhts3t64"},
          {"reference": "tabix"}
        ]
      }
    ]
  },
  "Ubuntu Linux-14.04": {
    "package_manager": "dpkg-l",
    "constraints": [
      {
        "release": "14.04",
        "pkgs": [
          {"reference": "htslib"}
        ]
      }
    ]
  },
  "Ubuntu Linux-16.04": {
    "package_manager": "dpkg-l",
    "constraints": [
      {
        "release": "16.04",
        "pkgs": [
          {"reference": "htslib"}
        ]
      }
    ]
  },
  "Ubuntu Linux-18.04": {
    "package_manager": "dpkg-l",
    "constraints": [
      {
        "release": "18.04",
        "pkgs": [
          {"reference": "htslib"}
        ]
      }
    ]
  },
  "Ubuntu Linux-20.04": {
    "package_manager": "dpkg-l",
    "constraints": [
      {
        "release": "20.04",
        "pkgs": [
          {"reference": "htslib"}
        ]
      }
    ]
  },
  "Ubuntu Linux-22.04": {
    "package_manager": "dpkg-l",
    "constraints": [
      {
        "release": "22.04",
        "pkgs": [
          {"reference": "htslib"}
        ]
      }
    ]
  },
  "Ubuntu Linux-24.04": {
    "package_manager": "dpkg-l",
    "constraints": [
      {
        "release": "24.04",
        "pkgs": [
          {"reference": "htslib"}
        ]
      }
    ]
  },
  "Ubuntu Linux-25.10": {
    "package_manager": "dpkg-l",
    "constraints": [
      {
        "release": "25.10",
        "pkgs": [
          {"reference": "htslib"}
        ]
      }
    ]
  }
};

var distro_constraints_values = linux_unpatched::get_distro_constraints(distro_constraints_arr:distro_constraints_array);
if (empty_or_null(distro_constraints_values)) audit(AUDIT_HOST_NOT, 'affected');
var report = linux_unpatched::check_unpatched_constraints(distro_constraints_values:distro_constraints_values);

if (!empty_or_null(report))
{
  security_report_v4(
      port       : 0,
      severity   : SECURITY_WARNING,
      extra      : report
  );
  exit(0);
}
else
{
  audit(AUDIT_HOST_NOT, 'affected');
}

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22 May 2026 00:00Current
6.3Medium risk
Vulners AI Score6.3
CVSS 3.18.1
CVSS 48.8
EPSS0.00061
SSVC
2